氧化钕暴露引起人胚肺成纤维细胞m6A修饰的改变及其机制

Modification of m6 A in human embryonic lung fibroblasts induced by neodymium oxide exposure and its mechanism

  • 摘要:
    背景  职业和环境颗粒物可引起机体纤维化,并伴随RNA的m6A修饰改变,氧化钕(Nd2O3)可导致小鼠肺部发生纤维化,里面含有大量成纤维细胞。
    目的  探讨Nd2O3引起人胚肺成纤维细胞(HELF细胞)纤维化过程中肿瘤坏死因子受体相关蛋白6/核因子-κB(TRAF6/NF-κB)信号通路的m6A修饰变化,并确定TRAF6的关键m6A修饰位点。
    方法  不同浓度的Nd2O3(0、1.563、3.125、6.25、12.5、25、50、100、200 mg∙L−1)染毒HELF细胞24、48 h,检测细胞活力,确定染毒时间及剂量。检测纤维化指标羟脯氨酸(HYP)、转化生长因子-β1(TGF-β1)、m6A甲基化水平、甲基化转移酶(METTL3和METTL14)、去甲基化酶(FTO和ALKBH5)、阅读蛋白(YTHDC2和YTHDF2)、纤维化相关基因Ⅰ型胶原蛋白(collagen-Ⅰ)、波形蛋白(vimentin)、α平滑肌肌动蛋白(α-SMA)、信号通路相关蛋白(TRAF6、NFKB1、P65、P-P65)等蛋白和基因表达情况。采用RNA甲基化免疫共沉淀-实时荧光定量PCR(MeRIP-qPCR)法检测TRAF6 mRNA中m6A的富集情况。
    结果  通过检测细胞活力,确定实验染毒剂量为6.25、12.5、25 mg∙L−1,染毒时间为48 h。暴露48 h后,相较于对照组,25 mg∙L−1 Nd2O3组HYP的含量升高,6.25、12.5、25 mg∙L−1 Nd2O3组TGF-β1的含量均升高(P < 0.05);HELF细胞12.5、25 mg∙L −1 Nd2O3组总体m6A甲基化的含量升高(P<0.05);在mRNA水平上,甲基化转移酶METTL3METTL14(6.25、12.5、25 mg∙L−1 Nd2O3组)的mRNA表达升高(P < 0.05);阅读蛋白 YTHDF2(6.25、12.5、25 mg∙L−1 Nd2O3组)的mRNA表达升高(P < 0.05),而 YTHDC2(25 mg∙L−1 Nd2O3组)的mRNA表达降低(P < 0.05);去甲基化酶 FTO(12.5、25 mg∙L−1 Nd2O3组)和ALKBH5(25 mg∙L−1 Nd2O3组)的mRNA表达降低(P < 0.05);纤维化相关基因 vimentinα-SMAcollagen-Ⅰ(6.25、12.5、25 mg∙L−1 Nd2O3)的mRNA表达升高(P < 0.05);通路相关基因 TRAF6(25 mg∙L−1 Nd2O3组)、NFKB1(12.5、25 mg∙L−1 Nd2O3组)的mRNA表达升高(P < 0.05);在蛋白水平上,相比于对照组,甲基化转移酶METTL3(25 mg∙L −1 Nd2O3组)和METTL14(12.5、25 mg∙L−1 Nd2O3组)升高(P < 0.05);阅读蛋白YTHDF2(12.5、25 mg∙L −1 Nd2O3组)升高,而YTHDC2(25 mg∙L−1 Nd2O3组)降低(均P<0.05);去甲基化酶FTO(25 mg∙L−1 Nd2O3组)降低(P<0.05);纤维化相关蛋白vimentin在Nd2O3浓度为25 mg∙L−1时升高,α-SMA、collagen-Ⅰ的蛋白相对表达量在Nd2O3浓度为12.5、25 mg∙L−1时升高(均P<0.05);TRAF6和P-P65在Nd2O3浓度为25 mg∙L−1时升高(均P<0.05)。MeRIP-qPCR结果显示,相较于对照组,Nd2O3暴露组的m6A富集比例明显增加(P<0.05)。
    结论  HELF暴露于Nd2O3后,细胞发生纤维化相关指标改变,使得部分m6A甲基化酶表达上升,去甲基化酶表达下降,从而使m6A甲基化上升,并可能通过激活TRAF6/NF-κB信号通路,促进纤维化的进展。

     

    Abstract:
    Background  Occupational and environmental particulate matter may cause fibrosis, accompanied by RNA m6A modification changes. Neodymium oxide (Nd2O3) can cause mouse lung fibrosis, which contains a large number of fibroblasts.
    Objective  To investigate m6A modification of tumor necrosis factor receptor-associated protein 6/nuclear factor-κB (TRAF6/NF-κB) signaling pathway in fibrosis of human embryonic lung fibroblasts induced by Nd2O3, and identify the key m6A modification sites of TRAF6.
    Methods  Designed concentrations of Nd2O3 (0, 1.563, 3.125, 6.25, 12.5, 25, 50, 100, and 200 mg∙L−1) were infected with HELF cells for 24 and 48 h, and cell viability was detected to determine exposure time and dose. Measurements included indicators of fibrosis hydroxyproline (HYP) and transforming growth factor-β1 (TGF-β1), m6A methylation level, methyltransferases (METTL3 and METTL14), demethylases (FTO and ALKBH5), reading proteins (YTHDC2 and YTHDF2), fibrosis-associated genes (collagen-І, vimentin, and α-SMA), and proteins related to signaling pathway (TRAF6, NFKB1, P65, and P-P65). The enrichment of m6A in TRAF6 mRNA was measured by methylated RNA immunoprecipitation-quantitative real-time PCR (MeRIP-qPCR).
    Results  The results of cell viability indicated that 6.25, 12.5, 25 mg∙L−1 Nd2O3 and 48 h exposure time were used for subsequent experiments. After 48 h exposure, compared with the control group, the HYP level in the 25 mg∙L−1 Nd2O3 group was increased, and the levels of TGF-β1 in the 6.25, 12.5, and 25 mg∙L−1 Nd2O3 groups were increased (P<0.05); the overall m6A methylation levels of HELF cells in the 12.5 and 25 mg∙L−1 Nd2O3 groups were increased (P<0.05). At mRNA level, compared with the control group, the mRNA expression levels of methyltransferasesMETTL3 and METTL14 (6.25, 12.5, and 25 mg∙L−1 Nd2O3) were increased (P<0.05); the mRNA expression level of reading proteinYTHDF2 (6.25, 12.5, and 25 mg∙L−1 Nd2O3) was increased (P<0.05), while the mRNA expression level ofYTHDC2 (25 mg∙L−1 Nd2O3) was decreased (P<0.05); the mRNA expression levels of demethylasesFTO (12.5 and 25 mg∙L−1 Nd2O3) and ALKBH5 (25 mg∙L−1 Nd2O3) were decreased (P<0.05); the mRNA expression levels of fibrosis-related genesvimentin, α-SMA, and collagen-Ⅰ (6.25, 12.5, and 25 mg∙L−1 Nd2O3) were increased (P<0.05); the mRNA expression levels of pathway-related genesTRAF6 (25 mg∙L−1 Nd2O3) and NFKB1 (12.5 and 25 mg∙L−1 Nd2O3) were increased (P<0.05). At protein level, compared with the control group, the expression levels of methyltransferases METTL3 (25 mg∙L−1 Nd2O3) and METTL14 (12.5 and 25 mg∙L−1 Nd2O3) were increased (P<0.05); the expression level of reading protein YTHDF2 (12.5 and 25 mg∙L−1 Nd2O3) was increased, while the expression level of YTHDC2 (25 mg∙L−1 Nd2O3) was decreased (P<0.05); the expression level of demethylase FTO (25 mg∙L−1 Nd2O3) was decreased (P<0.05); the expression level of fibrosis-associated protein vimentin was increased at 25 mg∙L−1 Nd2O3, and the expression levels of α-SMA and collagen-Ⅰ were increased at 12.5 and 25 mg∙L−1 Nd2O3 (P<0.05); the expression levels of TRAF6 and P-P65 were increased at 25 mg∙L−1 Nd2O3 (P<0.05). The MeRIP-qPCR results showed that compared with the control group, the concentrations of m6A in all Nd2O3 groups were significantly increased (P<0.05).
    Conclusions  Upon exposure of HELF cells to Nd2O3, the alterations in fibrosis-related indexes increase the expression of some m6A methylases and decrease the expression of demethylases, thereby increasing the m6A methylase level, and may promote the progression of fibrosis by activating the TRAF6/NF-κB signaling pathway.

     

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