温石棉染毒肺上皮细胞的miRNA表达谱分析

Expression profiling of miRNAs in chrysotile-exposed lung epithelial cells

  • 摘要:
    背景 温石棉被广泛应用于建筑、工业等领域。研究显示其易导致职业人群肺纤维化,但微小RNA(miRNA)参与温石棉致肺纤维化的研究较少,具体机制尚不明确。
    目的 采用二代测序技术分析温石棉染毒对人肺上皮细胞(BEAS-2B细胞)miRNA表达谱的影响,探讨差异表达的miRNA及相关信号通路的变化,寻找温石棉诱导肺纤维化的潜在靶点及分子机制。
    方法 本研究用激光粒度分析仪和X射线衍射仪对温石棉进行了粒径大小和物相分析,并对BEAS-2B细胞进行不同时间(12、24和48 h)、不同剂量(0、50、100和200 μg·mL−1)的温石棉染毒。用细胞活力检测试剂盒(CCK8)检测细胞存活率。通过蛋白免疫印迹(WB)检测200 μg·mL−1温石棉染毒BEAS-2B细胞24 h后纤维连接蛋白(Fibronectin)、胶原蛋白Ⅰ(Collagen-Ⅰ)和α-平滑肌肌动蛋白(α-SMA)的表达水平。二代测序技术分析温石棉染毒后与对照组的样本相关性和miRNA表达谱的变化。预测差异miRNA的靶基因并对其进行基因功能注释(GO)分析和京都基因与基因组百科全书(KEGG)通路富集分析。
    结果 本研究所用温石棉粉尘平均粒径为3.58 μm,X射线衍射分析结果均为温石棉特征峰。与对照组比较,温石棉随浓度和染毒时间的增加而逐渐抑制BEAS-2B细胞存活率(P<0.01)。50、100和200 μg·mL−1温石棉染毒细胞12 h后的存活率分别为83.88%±1.86%、78.07%±3.97%、71.95%±2.99%;染毒24 h后的存活率分别为77.41%±1.58%、69.57%±2.23%、62.79%±3.65%;染毒48 h后的存活率分别为74.31%±4.93%、65.84%±2.71%、52.74%±6.31%。200 μg·mL−1温石棉染毒BEAS-2B细胞后Fibronectin、Collagen-Ⅰ和α-SMA蛋白表达水平升高(P<0.05)。温石棉实验组和对照组主成分分析显示两组样本成分存在差异,共筛选出163个差异miRNA,其中上调79个,下调84个。GO分析显示差异miRNA主要与RNA聚合酶Ⅱ的转录调控、DNA模板转录调控、细胞分化、蛋白磷酸化、脂质代谢和细胞周期等生物学过程,细胞核、细胞膜、细胞骨架、线粒体和内质网等细胞组分以及蛋白结合、金属离子结合、转移酶活性和DNA结合等分子功能有关;KEGG分析显示差异miRNA的靶基因主要富集于癌症通路、磷脂酰肌醇3激酶/蛋白激酶B(PI3K/AKT)通路、Ras相关蛋白1(Rap1)通路、钙离子通路、环磷酸鸟苷/蛋白激酶(cGMP/PKG)通路、Hippo通路、环磷腺苷(cAMP)通路和Ras通路等。
    结论 温石棉染毒会抑制BEAS-2B细胞存活率,使肺纤维化相关蛋白表达升高,诱导miRNA差异表达,影响脂质代谢、蛋白磷酸化、细胞周期等生物学过程和线粒体、内质网等细胞组分,干扰PI3K/AKT通路、Hippo通路、cAMP通路、Rap1通路和Ras通路等。

     

    Abstract:
    Background Chrysotile is widely used in construction and industry. Research has shown that it is associated with lung fibrosis in occupational groups, but the involvement of microRNAs (miRNAs) in chrysotile-induced lung fibrosis has been less well studied, and the specific mechanism is still unclear.
    Objective Using next-generation sequencing technology to analyze the effects of chrysotile exposure on the miRNAs expression profiles of human lung epithelial cells (BEAS-2B cells), to explore the variations of differentially expressed miRNAs and related signaling pathways, and to identify potential targets and molecular mechanisms of chrysotile-induced lung fibrosis.
    Methods Chrysotile was analyzed with a laser particle size analyzer and an X-ray diffractometer for particle size and physical phase. BEAS-2B cells were exposed to chrysotile for designed time sessions (12, 24, and 48 h) and doses (0, 50, 100, and 200 μg·mL−1). Cell viability was detected with a cell viability assay kit (CCK8); expression levels of Fibronectin, Collagen-Ⅰ, and α-smooth muscle actin (α-SMA) were detected by Western blot after exposure to 200 μg·mL−1 chrysotile for 24 h. Sample correlation and changes in miRNAs expression profiles between the chrysotile-exposed and the control groups were analyzed by next-generation sequencing technology. The target genes of differentially expressed miRNAs were predicted and subjected to Gene Ontology (GO) analysis and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analysis.
    Results The average particle size of the chrysotile dust sample used in this study was 3.58 μm, and the results of X-ray diffraction analysis confirmed the characteristic peaks of chrysotile. Compared with the control group, the chrysotile gradually inhibited the survival rate of BEAS-2B cells with increasing concentration and exposure time (P<0.01). The survival rates of the 50, 100, and 200 μg·mL−1 chrysotile-exposed cells after 12 h exposure were 83.88%±1.86%, 78.07%±3.97%, and 71.95%±2.99%, respectively; the survival rates after 24 h exposure were 77.41%±1.58%, 69.57%±2.23%, and 62.79%±3.65%, respectively; the survival rates after 48 h exposure were 74.31%±4.93%, 65.84%±2.71%, and 52.74%±6.31%, respectively. The Fibronectin, Collagen-Ⅰ, and α-SMA protein expression levels were elevated in the 200 μg·mL−1 chrysotile-exposed BEAS-2B cells (P <0.05). The results of principal component analysis showed that there were differences in the composition of the samples between the chrysotile exposure group and the control group, and a total of 163 differential miRNAs were screened, of which 79 were up-regulated and 84 were down-regulated. The results of GO analysis showed that the differential miRNAs were mainly associated with biological processes such as regulation of transcription by RNA polymerase II, regulation of DNA templated transcription, cellular differentiation, protein phosphorylation, lipid metabolism, and cell cycle, cellular components such as nucleus, cytomembrane, cytoskeleton, mitochondria, and endoplasmic reticulum, as well as molecular functions such as protein binding, metal ion binding, transferase activity, and DNA binding. The results of KEGG analysis revealed that the differential miRNAs were mainly enriched in cancer pathway, phosphatidylinositol 3-kinase/ protein kinase B (PI3K/AKT) pathway, Ras-associated protein 1 (Rap1) pathway, calcium pathway, cyclic guanosine monophosphate/ protein kinase G (cGMP-PKG) pathway, Hippo pathway, cyclic adenosine monophosphate (cAMP) pathway, and Ras pathway.
    Conclusion Chrysotile exposure could significantly inhibit BEAS-2B cell survival, elevate the expression of lung fibrosis-associated proteins, and induce differential miRNAs expression, affecting biological processes (such as lipid metabolism, protein phosphorylation, and cell cycle) and cell components (such as mitochondria and endoplasmic reticulum), and interfering with PI3K/AKT pathway, Hippo pathway, cAMP pathway, Rap1 pathway, and Ras pathway.

     

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